PSampMethods Member List

This is the complete list of members for PSampMethods, including all inherited members.

addSidechain(string loopFile, string boundaryFile, string scwrl3_path, string outLoopFile)PSampMethods [static]
AddSidechain(string protein_input, int addStart, int addEnd, string scwrl3_path, string protein_output)PSampMethods [static]
DeformSampleBackbone(PProtein *orig_protein, int loopSid, int loopEid, int num_wanted, double deform_mag)PSampMethods [static]
FillMissingLoop(PProtein *original_p, int start_pdb_id, int end_pdb_id, vector< string > loop_seq)PSampMethods [static]
MergeProtein(PProtein *loop, PProtein *original_protein, int startRid)PSampMethods [static]
MergeProteinByPdbId(PProtein *loop, PProtein *original_protein, int startPdbId)PSampMethods [static]
PermuteIK(PProtein *loop, int num_wanted)PSampMethods [static]
RandAndIKClose(PProtein *loop, bool clash_free)PSampMethods [static]
RandAndIKClose(PProtein *loop, const string &pdbFileName, bool clash_free)PSampMethods [static]
SeedSampleBackbone(PProtein *protein, int loopSid, int loopEid, int num_wanted=1)PSampMethods [static]
SeedSampleBackbone(PProtein *protein, int loopSid, int loopEid, map< string, PPhiPsiDistribution > &distri_map, int num_wanted=1)PSampMethods [static]
SeedSampleBackboneLoopOnly(PProtein *original_protein, int loopSid, int loopEid, int num_wanted=1)PSampMethods [static]
SeedSampleBackboneLoopOnly(PProtein *original_protein, int loopSid, int loopEid, map< string, PPhiPsiDistribution > &distri_map, int num_wanted=1)PSampMethods [static]
SeedSampleBackboneWithSidechain(PProtein *protein, int loopSid, int loopEid, string scwrl3_path, int num_wanted=1)PSampMethods [static]
SeedSampleBackboneWithSidechain(PProtein *protein, int loopSid, int loopEid, map< string, PPhiPsiDistribution > &distri_map, string scwrl3_path, int num_wanted)PSampMethods [static]
SeedSampleBackboneWithSidechainLoopOnly(PProtein *original_protein, int loopSid, int loopEid, string scwrl3_path, int num_wanted=1)PSampMethods [static]
SeedSampleBackboneWithSidechainLoopOnly(PProtein *original_protein, int loopSid, int loopEid, map< string, PPhiPsiDistribution > &distri_map, string scwrl3_path, int num_wanted)PSampMethods [static]


Generated on Tue Aug 26 16:06:15 2008 for LoopTK: Protein Loop Kinematic Toolkit by  doxygen 1.5.1